

NetAtlas For Linux v.1.1 NetAtlas is a Cytoscape plugin that uses tissue gene expression data to filter cellular signaling network.ReConn v.1.0 Reconn is a Cytoscape plugin for exploring and visualizing Reactome.It has been designed with (microbial) ecological data in mind, but can be applied in general. CoNet v.1.0 CoNet is a Cytoscape plugin that detects significant non-random patterns of co-occurrence (copresence and mutual exclusion) in incidence and abundance data.The plugin identifies of tissue-defined networks, tissue-specific network components, and components with correlated expression across tissues. NetAtlas v.1.1 NetAtlas is a Cytoscape plugin that uses tissue gene expression data to filter cellular signaling network.Instead of SBMLReader2 use CySBML, a Cytoscape plugin for SBML, based on JSBML with identical functionality as the SBMLReader 2 which can be found. SBMLReader2 v.0.11 ! SBMLReader2 is no longer developed !.CyReposition v.0.02 CyReposition is an open source Cytoscape Plugin for the reuse of existing Cytoscape network layouts in new Cytoscape projects.ĬyReposition copies the node positions based on the node ids from one layout and applies them to another network.CyFluxViz v.0.91 CyFluxViz - Cytoscape Plugin for the visualization of flux distributions in networks.Users input a set of proteins and retrieve a network of plausible protein and domain interactions with a. Cytoprophet v.1.0 Cytoprophet is a Cytoscape plugin that helps researchers infer new potential protein (PPI) and domain (DDI) interactions.Reposition Plugin for Cytoscape v.0.02 Reposition is an open source Cytoscape Plugin for the reuse of existing Cytoscape network layouts in new Cytoscape.The CytoSEED plugin was designed in order to enable users of the Model SEED to create informative visualizations.

CytoSEED v.1.1 CytoSEED was built as a Cytoscape plugin that can help you view, manipulate and analyze metabolic models created using the Model SEED.CytoSEED:Cytoscape plugin for Model SEED v.1.0 This project implements a Cytoscape plugin for viewing and manipulating pathway maps for metabolic models created by the Model SEED ().
